On the PBB Designs for Multiresponse Experiments

We present the idea of using multiresponse incomplete block designs when not all responses can be observed in all experimental units. For a special class of such designs, in which partial designs are PBB designs, a method for estimating natural treatment contrast is given. We also consider the problem of testing the hypotheses concerning the natural and any estimable treatment contrasts. For testing this hypothesis the Wald statistics, being asymptotically chi-square distributed, is proposed.     

The Pressurized Porous Surface Model: An improved tool to study bacterial behavior under a wide range of environmentally relevant matric potentials

To study bacterial behavior under varying hydration conditions similar to surface soil, we have developed a system called the Pressurized Porous Surface Model (PPSM). Thin liquid films created by imposing a matric potential of − 0.4 MPa impact gene expression and colony development in Pseudomonas putida.     

Biphasic Cell-Size and Growth-Rate Homeostasis by Single Bacillus subtilis Cells

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Root responses to legume plants integrate information on nitrogen availability and neighbour identity

Rhizobial symbiosis is known to increase the nitrogen availability in the rhizosphere of legumes. Therefore, it has been hypothesized that other plants’ roots should forage towards legume neighbours, but avoid non-legume neighbours. Yet, root distribution responding to legume plants as opposed to non-legumes has not yet been rigorously tested and might well be subject to integration of multiple environmental cues.In this study, wedevised an outdoor mesocosm experiment to examine root distributions of the two plant species Pilosella officinarum and Arenaria serpyllifolia in a two-factorial design. While one factor was ‘neighbour identity’, where plants were exposed to different legume or non-legume neighbours, the other factor was ‘nitrogen supply’. In the latter the nutrient-poor soil was supplemented with either nitrogen-free or with nitrogen-containing fertilizer.Unexpectedly, of all treatments that included a legume neighbour (eight different species or factor combinations), we found merely one case of root aggregation towards a legume neighbour (P. officinarum towards Medicago minima under nitrogen-fertilized conditions). In this very treatment, also P. officinarum root–shoot allocation was strongly increased, indicating that neighbour recognition is coupled with a contesting strategy.Considering the various response modes of the tested species towards the different legume and non-legume neighbours, we can conclude that roots integrate information on neighbour identity and resource availability in a complex manner. Especially the integration of neighbour identity in root decisions must be a vital aptitude for plants to cope with their complex biotic and abiotic environment in the field.     

Effects of the supply levels and ratios of nitrogen and phosphorus on seed traits of Chenopodium glaucum

全球氮沉降不仅改变土壤氮和磷的有效性, 同时也改变氮磷比例。氮磷供应量、比例及其交互作用可能会影响植物种子性状。该研究在内蒙古草原基于沙培盆栽实验种植灰绿藜(Chenopodium glaucum), 设置3个氮磷供应量水平和3个氮磷比例的正交实验来探究氮磷供应量、比例及其交互作用对灰绿藜种子性状的影响。结果发现氮磷供应量对种子氮浓度、磷浓度和萌发率影响的相对贡献(15%-24%)大于氮磷比例(3%-7%), 而种子大小只受氮磷比例的影响。同时氮磷供应量和比例之间的交互作用显著影响种子氮浓度和磷浓度。同等氮磷比例情况下, 低量养分供应提高种子氮浓度、磷浓度和萌发率。氮磷比例只有在养分匮乏的环境中才会对种子大小和萌发率产生显著影响。总之, 灰绿藜种子不同性状对氮或磷限制的敏感性不同, 同时种子性状也对养分限制表现出适应性和被动响应。     

Discovery of Species-unique Peptide Biomarkers of Bacterial Pathogens by Tandem Mass Spectrometry-based Proteotyping

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Highlights

• •Discovery of peptide biomarker candidates of respiratory tract pathogens S. pneumoniae, H. influenzae, M. catarrhalis and S. aureus as target pathogens.
• •Peptide biomarker candidates were experimentally verified in clinical samples.
• •Targeted MS using promising peptide biomarker candidates shown as proof-of-concept.

     

Understanding of Aquifer Microbiology is Tightly Linked to Sampling Approaches

Primary samples of groundwater or core are collected and analyzed to characterize the microbiology of aquifers and to predict biogeochemical transformations. Alternative sampling devices have been developed that are incubated for some length of time in the aquifer to accrue biomass for analysis. Considering data generated from different types of aquifer samples, it appears that the type of sample collected and analyzed may strongly influence the resulting view of aquifer microbiology. Borehole artifacts need to be rigorously considered when incubated substrata are used. The indigenous attached populations in deeper, fractured rock aquifers remain understudied and await new sampling approaches.